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  5. Optical projection tomography implemented for accessibility and low cost (OPTImAL)
 
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Optical projection tomography implemented for accessibility and low cost (OPTImAL)
File(s)
darling-et-al-2024-optical-projection-tomography-implemented-for-accessibility-and-low-cost-(optimal).pdf (3.17 MB)
Published version
Author(s)
Darling, C
Kumar, S
Alexandrov, Y
de Faye, J
Almagro Santiago, J
more
Type
Journal Article
Abstract
Optical projection tomography (OPT) is a three-dimensional mesoscopic imaging modality that can use absorption or fluorescence contrast, and is widely applied to fixed and live samples in the mm-cm scale. For fluorescence OPT, we present OPT implemented for accessibility and low cost, an open-source research-grade implementation of modular OPT hardware and software that has been designed to be widely accessible by using low-cost components, including light-emitting diode (LED) excitation and cooled complementary metal-oxide-semiconductor (CMOS) cameras. Both the hardware and software are modular and flexible in their implementation, enabling rapid switching between sample size scales and supporting compressive sensing to reconstruct images from undersampled sparse OPT data, e.g. to facilitate rapid imaging with low photobleaching/phototoxicity. We also explore a simple implementation of focal scanning OPT to achieve higher resolution, which entails the use of a fan-beam geometry reconstruction method to account for variation in magnification. This article is part of the Theo Murphy meeting issue 'Open, reproducible hardware for microscopy'.
Date Issued
2024-07
Date Acceptance
2024-03-21
Citation
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 2024, 382 (2274)
URI
http://hdl.handle.net/10044/1/112403
URL
https://royalsocietypublishing.org/doi/10.1098/rsta.2023.0101
DOI
https://www.dx.doi.org/10.1098/rsta.2023.0101
ISSN
1364-503X
Publisher
The Royal Society
Journal / Book Title
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
Volume
382
Issue
2274
Copyright Statement
© 2024 The Authors.

Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
License URL
https://creativecommons.org/licenses/by/4.0/
Identifier
https://www.ncbi.nlm.nih.gov/pubmed/38826047
Subjects
microscopy
open hardware
open-source
optical projection tomography
Publication Status
Published
Coverage Spatial
England
Article Number
20230101
Date Publish Online
2024-06-03
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