Discovery of photoactive anti-cancer platinum(II) complexes: synthesis, screening and machine learning approaches
File(s)
Author(s)
Bartlett, Molly
Type
Thesis
Abstract
A prevailing issue with current anti-cancer therapeutics is non-specific drug toxicity leading to a range of negative side effects. One way to avoid these off-target effects is through the use of pro-drugs: drugs which are non-toxic until activated by a trigger such as an enzyme, change in pH or light. However, the development of new drugs is a highly laborious process, which takes many years and costs millions of pounds. Recent advances in drug discovery have been accelerated by the use of data driven and machine learning approaches. This thesis presents a case study applying such approaches to the discovery of photoactive complexes as anti-cancer therapeutics.
Within this thesis 22 new platinum(II) salphen complexes were synthesised during the development of a high throughput (HT) synthesis and screening pipeline. Platinum(II) salphen complexes were selected for their unique photophysical properties and known binding affinity to alternate DNA secondary structures highly enriched in cancer cells. To determine the potential drug-like properties of the complexes, photoactivity, DNA binding, DNA damage, and cellular activity were screened. As a result, two lead candidates were identified which had good DNA binding affinity and selectivity, cell permeability, and localisation within the nucleus. These complexes were shown to be non-toxic within cancer cells until irradiated, at which point they exhibited IC50 values of 0.29 µM and 2.57 µM.
Alongside the experimental work, computational calculations were performed on a larger library of 263 platinum(II) salphen complexes for the application of machine learning (ML) prediction tasks. The objectives of these ML models were to better understand structure activity relationships (SAR) and predict photophysical properties of unseen platinum(II) salphen complexes.
Overall, this work has combined data driven experimental and computational approaches for the synthesis, screening and ML analysis of platinum(II) salphen complexes as potential novel photoactive anti-cancer therapeutics.
Within this thesis 22 new platinum(II) salphen complexes were synthesised during the development of a high throughput (HT) synthesis and screening pipeline. Platinum(II) salphen complexes were selected for their unique photophysical properties and known binding affinity to alternate DNA secondary structures highly enriched in cancer cells. To determine the potential drug-like properties of the complexes, photoactivity, DNA binding, DNA damage, and cellular activity were screened. As a result, two lead candidates were identified which had good DNA binding affinity and selectivity, cell permeability, and localisation within the nucleus. These complexes were shown to be non-toxic within cancer cells until irradiated, at which point they exhibited IC50 values of 0.29 µM and 2.57 µM.
Alongside the experimental work, computational calculations were performed on a larger library of 263 platinum(II) salphen complexes for the application of machine learning (ML) prediction tasks. The objectives of these ML models were to better understand structure activity relationships (SAR) and predict photophysical properties of unseen platinum(II) salphen complexes.
Overall, this work has combined data driven experimental and computational approaches for the synthesis, screening and ML analysis of platinum(II) salphen complexes as potential novel photoactive anti-cancer therapeutics.
Version
Open Access
Date Issued
2025-03-21
Date Awarded
01/06/2025
Advisor
Vilar Compte, Ramon
Barahona, Mauricio
Sponsor
Engineering and Physical Sciences Research Council (Great Britain)
Grant Number
EP/S023232/1
Publisher Department
Department of Chemistry
Publisher Institution
Imperial College London
Qualification Level
Doctoral
Qualification Name
Doctor of Philosophy (PhD)