PialNN: A fast deep learning framework for cortical pial surface reconstruction
File(s)2109.03693v1.pdf (7.29 MB)
Accepted version
Author(s)
Ma, Qiang
Robinson, Emma C
Kainz, Bernhard
Rueckert, Daniel
Alansary, Amir
Type
Conference Paper
Abstract
Traditional cortical surface reconstruction is time consuming and limited by the resolution of brain Magnetic Resonance Imaging (MRI). In this work, we introduce Pial Neural Network (PialNN), a 3D deep learning framework for pial surface reconstruction. PialNN is trained end-to-end to deform an initial white matter surface to a target pial surface by a sequence of learned deformation blocks. A local convolutional operation is incorporated in each block to capture the multi-scale MRI information of each vertex and its neighborhood. This is fast and memory-efficient, which allows reconstructing a pial surface mesh with 150k vertices in one second. The performance is evaluated on the Human Connectome Project (HCP) dataset including T1-weighted MRI scans of 300 subjects. The experimental results demonstrate that PialNN reduces the geometric error of the predicted pial surface by 30% compared to state-of-the-art deep learning approaches. The codes are publicly available at https://github.com/m-qiang/PialNN.
Date Issued
2021-09-21
Date Acceptance
2021-06-11
Citation
Lecture Notes in Computer Science, 2021, pp.73-81
ISSN
0302-9743
Publisher
Springer
Start Page
73
End Page
81
Journal / Book Title
Lecture Notes in Computer Science
Copyright Statement
© 2021 Springer Nature Switzerland AG. The final publication is available at Springer via https://link.springer.com/chapter/10.1007/978-3-030-87586-2_8
Source
24th International Conference on Medical Image Computing and Computer Assisted Intervention
Subjects
eess.IV
eess.IV
Artificial Intelligence & Image Processing
Publication Status
Published
Start Date
2021-09-27
Finish Date
2021-10-01
Coverage Spatial
Virtual