REvoSim: Organism-level simulation of macro and microevolution
File(s)REVOSIM_paper_resubmission.pdf (358.36 KB)
Accepted version
Author(s)
Garwood, RJ
Spencer, ART
Sutton, MD
Type
Journal Article
Abstract
Macroevolutionary processes dictate the generation and loss of biodiversity. Understanding them is a key challenge when interrogating the earth–life system in deep time. Model-based approaches can reveal important macroevolutionary patterns and generate hypotheses on the underlying processes. Here we present and document a novel model called REvoSim (Rapid Evolutionary Simulator) coupled with a software implementation of this model. The latter is available here as both source code (C++/Qt, GNU General Public License) and as distributables for a variety of operating systems. REvoSim is an individual-based model with a strong focus on computational efficiency. It can simulate populations of 10 5 –10 7 digital organisms over geological timescales on a typical desktop computer, and incorporates spatial and temporal environmental variation, recombinant reproduction, mutation and dispersal. Whilst microevolutionary processes drive the model, macroevolutionary phenomena such as speciation and extinction emerge. We present results and analysis of the model focusing on validation, and note a number potential applications. REvoSim can serve as a multipurpose platform for studying both macro and microevolution, and bridges this divide. It will be continually developed by the authors to expand its capabilities and hence its utility.
Date Issued
2019-05-01
Date Acceptance
2018-12-12
Citation
Palaeontology, 2019, 62 (3), pp.339-355
ISSN
0031-0239
Publisher
Wiley
Start Page
339
End Page
355
Journal / Book Title
Palaeontology
Volume
62
Issue
3
Copyright Statement
© 2019 The Palaeontological Association. This is the accepted version of the following article: Garwood, R. J., Spencer, A. R. and Sutton, M. D. (2019), REvoSim: Organism‐level simulation of macro and microevolution. Palaeontology., which has been published in final form at https://dx.doi.org/10.1111/pala.12420
Subjects
Science & Technology
Life Sciences & Biomedicine
Paleontology
macroevolution
microevolution
individual-based model
speciation
REvoSim
palaeoware
digital evolution
EXPERIMENTAL EVOLUTION
DIVERSITY
DYNAMICS
ECOLOGY
MODEL
ADAPTATION
ROBUSTNESS
0403 Geology
0602 Ecology
0603 Evolutionary Biology
Paleontology
Publication Status
Published
Date Publish Online
2019-02-22