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SPUTNIK: an R package for filtering of spatially related peaks in mass spectrometry imaging data
File(s)
bty622.pdf (642.31 KB)
Published version
OA Location
Author(s)
Inglese, Paolo
Correia, Gonçalo
Takats, Zoltan
Nicholson, Jeremy K
Glen, Robert C
Type
Journal Article
Abstract
Summary: SPUTNIK is an R package consisting of a series of tools to filter mass spectrometry imaging peaks characterized by a noisy or unlikely spatial distribution. SPUTNIK can produce mass spectrometry imaging datasets characterized by a smaller but more informative set of peaks, reduce the complexity of subsequent multi-variate analysis and increase the interpretability of the statistical results. Availability: SPUTNIK is freely available online from CRAN repository and at https://github.com/paoloinglese/SPUTNIK. The package is distributed under the GNU General Public License version 3 and is accompanied by example files and data. Supplementary information: Supplementary data are available at Bioinformatics online.
Date Issued
2019-01-01
Date Acceptance
2018-07-10
Citation
Bioinformatics, 2019, 35 (1), pp.178-180
URI
DOI
ISSN
1367-4803
Publisher
Oxford University Press (OUP)
Start Page
178
End Page
180
Journal / Book Title
Bioinformatics
Volume
35
Issue
1
Copyright Statement
© The Author(s) 2018. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.or g/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
Sponsor
Imperial College Healthcare NHS Trust- BRC Funding
Imperial College Healthcare NHS Trust- BRC Funding
Imperial College Healthcare NHS Trust- BRC Funding
Imperial College Healthcare NHS Trust- BRC Funding
Imperial College Healthcare NHS Trust- BRC Funding
Identifier
https://www.ncbi.nlm.nih.gov/pubmed/30010780
PII: 5053317
Grant Number
RDB03 79560
RDB20
RDB20
RDF03
RDB01
Subjects
01 Mathematical Sciences
06 Biological Sciences
08 Information And Computing Sciences
Bioinformatics
Publication Status
Published
Coverage Spatial
England
Article Number
bty622
Date Publish Online
2018-07-13