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  4. Simultaneous single-channel multiplexing and quantification of carbapenem-resistant genes using multidimensional standard curves
 
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Simultaneous single-channel multiplexing and quantification of carbapenem-resistant genes using multidimensional standard curves
File(s)
acs.analchem.8b04412.pdf (952.36 KB)
Accepted version
Author(s)
Rodriguez-Manzano, Jesus
Moniri, Ahmad
Malpartida-Cardenas, Kenny
Dronavalli, Jyothsna
Davies, Frances
more
Type
Journal Article
Abstract
Multiplexing and quantification of nucleic acids, both have, in their own right, significant and extensive use in biomedical related fields. Currently, the ability to detect several nucleic acid targets in a single-reaction scales linearly with the number of targets; an expensive and time-consuming feat. Here, we propose a new methodology based on multidimensional standard curves that extends the use of real-time PCR data obtained by common qPCR instruments. By applying this novel method-ology, we achieve simultaneous single-channel multiplexing and enhanced quantification of multiple targets using only real-time amplification data. This is obtained without the need of fluorescent probes, agarose gels, melting curves or sequencing analysis. Given the importance and demand for tackling challenges in antimicrobial resistance, the proposed method is ap-plied to four of the most prominent carbapenem-resistant genes: blaOXA-48, blaNDM, blaVIM and blaKPC, which account for 97% of the UK's reported carbapenemase-producing Enterobacteriaceae.
Date Issued
2019-02-05
Date Acceptance
2019-01-09
Citation
Analytical Chemistry, 2019, 91 (3), pp.2013-2020
URI
http://hdl.handle.net/10044/1/65997
DOI
https://www.dx.doi.org/10.1021/acs.analchem.8b04412
ISSN
0003-2700
Publisher
American Chemical Society
Start Page
2013
End Page
2020
Journal / Book Title
Analytical Chemistry
Volume
91
Issue
3
Copyright Statement
© 2019 American Chemical Society. This document is the Accepted Manuscript version of a Published Work that appeared in final form in Analytical Chemistry, after peer review and technical editing by the publisher. To access the final edited and published work see https://dx.doi.org/10.1021/acs.analchem.8b04412
Sponsor
National Institute for Health Research
National Institute for Health Research
Engineering & Physical Science Research Council (EPSRC)
Identifier
https://www.ncbi.nlm.nih.gov/pubmed/30624047
Grant Number
HPRU-2012-10047
HPRU-2012-10047
EP/R512655/1
Subjects
0301 Analytical Chemistry
0904 Chemical Engineering
0399 Other Chemical Sciences
Analytical Chemistry
Publication Status
Published
Coverage Spatial
United States
Date Publish Online
2019-01-09
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