Rapid three dimensional two photon neural population scanning
File(s)final.pdf (2.1 MB)
Accepted version
Author(s)
Schuck, R
Quicke, P
Hwang, JK
Annecchino, L
Schultz, SR
Type
Conference Paper
Abstract
Recording the activity of neural populations
at high sampling rates is a fundamental requirement for
understanding computation in neural circuits. Two photon
microscopy provides one promising approach towards this.
However, neural circuits are three dimensional, and functional
imaging in two dimensions fails to capture the 3D nature
of neural dynamics. Electrically tunable lenses (ETLs) provide
a simple and cheap method to extend laser scanning
microscopy into the relatively unexploited third dimension.
We have therefore incorporated them into our Adaptive Spiral
Scanning (SSA) algorithm, which calculates kinematically
efficient scanning strategies using radially modulated spiral
paths. We characterised the response of the ETL, incorporated
its dynamics using MATLAB models of the SSA algorithm
and tested the models on populations of Izhikevich neurons
of varying size and density. From this, we show that our
algorithms can theoretically at least achieve sampling rates of
36.2Hz compared to 21.6Hz previously reported for 3D scanning
techniques.
at high sampling rates is a fundamental requirement for
understanding computation in neural circuits. Two photon
microscopy provides one promising approach towards this.
However, neural circuits are three dimensional, and functional
imaging in two dimensions fails to capture the 3D nature
of neural dynamics. Electrically tunable lenses (ETLs) provide
a simple and cheap method to extend laser scanning
microscopy into the relatively unexploited third dimension.
We have therefore incorporated them into our Adaptive Spiral
Scanning (SSA) algorithm, which calculates kinematically
efficient scanning strategies using radially modulated spiral
paths. We characterised the response of the ETL, incorporated
its dynamics using MATLAB models of the SSA algorithm
and tested the models on populations of Izhikevich neurons
of varying size and density. From this, we show that our
algorithms can theoretically at least achieve sampling rates of
36.2Hz compared to 21.6Hz previously reported for 3D scanning
techniques.
Date Issued
2015-08-25
Date Acceptance
2015-06-30
Citation
2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2015, pp.5867-5870
ISSN
1557-170X
Publisher
IEEE
Start Page
5867
End Page
5870
Journal / Book Title
2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)
Copyright Statement
© 2015 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.
Sponsor
Biotechnology and Biological Sciences Research Council (BBSRC)
Grant Number
BB/K001817/1
Source
37th Annual International IEEE EMBS Conference of the IEEE Engineering in Medicine and Biology Society
Publication Status
Published
Start Date
2015-08-25
Finish Date
2015-08-29
Coverage Spatial
Milan, Italy