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  5. Outbreak analytics: a developing data science for informing the response to emerging pathogens
 
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Outbreak analytics: a developing data science for informing the response to emerging pathogens
File(s)
rstb.2018.0276.pdf (732.01 KB)
Published version
Author(s)
Polonsky, Jonathan A
Baidjoe, Amrish
Kamvar, Zhian N
Cori, Anne
Durski, Kara
more
Type
Journal Article
Abstract
Despite continued efforts to improve health systems worldwide, emerging pathogen epidemics remain a major public health concern. Effective response to such outbreaks relies on timely intervention, ideally informed by all available sources of data. The collection, visualization and analysis of outbreak data are becoming increasingly complex, owing to the diversity in types of data, questions and available methods to address them. Recent advances have led to the rise of outbreak analytics, an emerging data science focused on the technological and methodological aspects of the outbreak data pipeline, from collection to analysis, modelling and reporting to inform outbreak response. In this article, we assess the current state of the field. After laying out the context of outbreak response, we critically review the most common analytics components, their inter-dependencies, data requirements and the type of information they can provide to inform operations in real time. We discuss some challenges and opportunities and conclude on the potential role of outbreak analytics for improving our understanding of, and response to outbreaks of emerging pathogens.

This article is part of the theme issue ‘Modelling infectious disease outbreaks in humans, animals and plants: epidemic forecasting and control‘. This theme issue is linked with the earlier issue ‘Modelling infectious disease outbreaks in humans, animals and plants: approaches and important themes’.
Date Issued
2019-07-01
Date Acceptance
2019-04-19
Citation
Philosophical Transactions B: Biological Sciences, 2019, 374 (1776)
URI
http://hdl.handle.net/10044/1/70268
DOI
https://www.dx.doi.org/10.1098/rstb.2018.0276
ISSN
0962-8436
Publisher
Royal Society, The
Journal / Book Title
Philosophical Transactions B: Biological Sciences
Volume
374
Issue
1776
Copyright Statement
© 2019 The Authors. Published by the Royal Society under the terms of the Creative Commons AttributionLicense http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the originalauthor and source are credited.
Sponsor
National Institute for Health Research
Medical Research Council (MRC)
Grant Number
HPRU-2012-10080
MR/R015600/1
Subjects
epidemics
infectious
methods
pipeline
software
tools
06 Biological Sciences
11 Medical and Health Sciences
Evolutionary Biology
Publication Status
Published
Date Publish Online
2019-05-20
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