Chromatinization of Escherichia coli with archaeal histones
File(s)ELIFE_2019B.pdf (9.3 MB)
Published version
Author(s)
Rojec, Maria
Hocher, Antoine
Stevens, Kathryn M
Merkenschlager, Matthias
Warnecke, Tobias
Type
Journal Article
Abstract
Nucleosomes restrict DNA accessibility throughout eukaryotic genomes, with
repercussions for replication, transcription, and other DNA-templated processes. How this globally
restrictive organization emerged during evolution remains poorly understood. Here, to better
understand the challenges associated with establishing globally restrictive chromatin, we express
histones in a naive system that has not evolved to deal with nucleosomal structures: Escherichia
coli. We find that histone proteins from the archaeon Methanothermus fervidus assemble on the E.
coli chromosome in vivo and protect DNA from micrococcal nuclease digestion, allowing us to map
binding footprints genome-wide. We show that higher nucleosome occupancy at promoters is
associated with lower transcript levels, consistent with local repressive effects. Surprisingly,
however, this sudden enforced chromatinization has only mild repercussions for growth unless cells
experience topological stress. Our results suggest that histones can become established as
ubiquitous chromatin proteins without interfering critically with key DNA-templated processes.
repercussions for replication, transcription, and other DNA-templated processes. How this globally
restrictive organization emerged during evolution remains poorly understood. Here, to better
understand the challenges associated with establishing globally restrictive chromatin, we express
histones in a naive system that has not evolved to deal with nucleosomal structures: Escherichia
coli. We find that histone proteins from the archaeon Methanothermus fervidus assemble on the E.
coli chromosome in vivo and protect DNA from micrococcal nuclease digestion, allowing us to map
binding footprints genome-wide. We show that higher nucleosome occupancy at promoters is
associated with lower transcript levels, consistent with local repressive effects. Surprisingly,
however, this sudden enforced chromatinization has only mild repercussions for growth unless cells
experience topological stress. Our results suggest that histones can become established as
ubiquitous chromatin proteins without interfering critically with key DNA-templated processes.
Date Issued
2019-11-06
Date Acceptance
2019-11-05
Citation
eLife, 2019, 8, pp.1-23
ISSN
2050-084X
Publisher
eLife Sciences Publications Ltd
Start Page
1
End Page
23
Journal / Book Title
eLife
Volume
8
Copyright Statement
Copyright Rojec et al. This
article is distributed under the
terms of the Creative Commons
Attribution License, which
permits unrestricted use and
redistribution provided that the
original author and source are
credited.
article is distributed under the
terms of the Creative Commons
Attribution License, which
permits unrestricted use and
redistribution provided that the
original author and source are
credited.
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000498686000001&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Subjects
Science & Technology
Life Sciences & Biomedicine
Biology
Life Sciences & Biomedicine - Other Topics
DNA-BINDING
METHANOTHERMUS-FERVIDUS
MUTATIONAL ANALYSIS
GENE-REGULATION
H-NS
TRANSCRIPTION
EXPRESSION
GROWTH
PHASE
TRANSFORMATION
Publication Status
Published
Article Number
ARTN e49038
Date Publish Online
2019-11-06