Accurate numerical simulation of electrodiffusion and water movement in brain tissue
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Published version
Author(s)
Ellingsrud, Ada J
Boullé, Nicolas
Farrell, Patrick E
Rognes, Marie E
Type
Journal Article
Abstract
Mathematical modelling of ionic electrodiffusion and water movement is emerging as a powerful avenue of investigation to provide a new physiological insight into brain homeostasis. However, in order to provide solid answers and resolve controversies, the accuracy of the predictions is essential. Ionic electrodiffusion models typically comprise non-trivial systems of non-linear and highly coupled partial and ordinary differential equations that govern phenomena on disparate time scales. Here, we study numerical challenges related to approximating these systems. We consider a homogenized model for electrodiffusion and osmosis in brain tissue and present and evaluate different associated finite element-based splitting schemes in terms of their numerical properties, including accuracy, convergence and computational efficiency for both idealized scenarios and for the physiologically relevant setting of cortical spreading depression (CSD). We find that the schemes display optimal convergence rates in space for problems with smooth manufactured solutions. However, the physiological CSD setting is challenging: we find that the accurate computation of CSD wave characteristics (wave speed and wave width) requires a very fine spatial and fine temporal resolution.
Date Issued
2021-12
Date Acceptance
2021-10-19
Citation
Mathematical Medicine and Biology, 2021, 38 (4), pp.516-551
ISSN
1477-8599
Publisher
Oxford University Press
Start Page
516
End Page
551
Journal / Book Title
Mathematical Medicine and Biology
Volume
38
Issue
4
Copyright Statement
© The Author(s) 2021. Published by Oxford University Press on behalf of the Institute of Mathematics and its Applications. This is an Open
Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which
permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which
permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
License URL
Identifier
https://www.ncbi.nlm.nih.gov/pubmed/34791309
Subjects
Brain
Computer Simulation
Water Movements
brain electrophysiology and mechanics
electrodiffusion
finite element method
numerical convergence
osmosis
splitting scheme
Publication Status
Published
Coverage Spatial
England
Date Publish Online
2021-11-17