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  4. On the interpretation of kinetics and thermodynamics probed by single-molecule experiments
 
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On the interpretation of kinetics and thermodynamics probed by single-molecule experiments
File(s)
Angioletti-Uberti2020_Article_OnTheInterpretationOfKineticsA(1).pdf (446.63 KB)
Published version
Author(s)
Angioletti-Uberti, Stefano
Type
Journal Article
Abstract
Single-molecule pulling experiments are widely used to extract both thermodynamic and kinetic data on ligand-receptor pairs, typically by fitting different models to the probability distribution of rupture forces of the corresponding bond. Here, a theoretical model is presented that shows how a measurement of the number of binding and unbinding events as a function of the observation time can also give access to both the binding (kon) and the unbinding (koff) rates of bonds, which combined provide a well-defined bond free-energy ΔGbond. The connection between ΔGbond and the ligand-receptor binding constant measured by typical binding essays is critically discussed. The role played by the molecular construct used to tether ligands and receptors to a surface is considered, highlighting the various approximations necessary to derive general expressions that connect its structure to its contribution, termed ΔGcnf, to the bond free-energy. In this way, the validity and the assumptions underpinning widely employed formulas and experimental protocols used to extract binding constants from single-molecule experiments are assessed. Finally, the role of ΔGcnf in processes mediated by ligand-receptor binding is briefly considered, and an experiment to unambiguously measure this quantity proposed.
Date Issued
2020-07-01
Date Acceptance
2020-04-19
Citation
Colloid and Polymer Science: Kolloid-Zeitschrift und Zeitschrift fuer Polymere, 2020, 298, pp.819-827
URI
http://hdl.handle.net/10044/1/79558
DOI
https://www.dx.doi.org/10.1007/s00396-020-04662-z
ISSN
0303-402X
Publisher
Springer (part of Springer Nature)
Start Page
819
End Page
827
Journal / Book Title
Colloid and Polymer Science: Kolloid-Zeitschrift und Zeitschrift fuer Polymere
Volume
298
Copyright Statement
© The Author(s) 2020. This article is licensed under a Creative Commons
Attribution 4.0 International License, which permits use, sharing,
adaptation, distribution and reproduction in any medium or format, as
long as you give appropriate credit to the original author(s) and the
source, provide a link to the Creative Commons licence, and indicate
if changes were made. The images or other third party material in this
article are included in the article’s Creative Commons licence, unless
indicated otherwise in a credit line to the material. If material is not
included in the article’s Creative Commons licence and your intended
use is not permitted by statutory regulation or exceeds the permitted
use, you will need to obtain permission directly from the copyright
holder. To view a copy of this licence, visit http://creativecommons.
org/licenses/by/4.0/.
Subjects
Science & Technology
Physical Sciences
Chemistry, Physical
Polymer Science
Chemistry
Ligand-receptor interactions
Single-molecule experiments
Statistical mechanics
Kinetics
Modelling
FORCE SPECTROSCOPY
ADHESION
LIFETIME
Polymers
0303 Macromolecular and Materials Chemistry
0306 Physical Chemistry (incl. Structural)
0912 Materials Engineering
Publication Status
Published
Date Publish Online
2020-05-15
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