Accurate encoding and decoding by single cells: amplitude versus frequency modulation.
File(s)AccurateEncodingAndDecoding.pdf (2.3 MB)
Published version
Author(s)
Micali, G
Aquino, G
Richards, DM
Endres, RG
Type
Journal Article
Abstract
Cells sense external concentrations and, via biochemical signaling, respond by regulating the expression of target proteins. Both in signaling networks and gene regulation there are two main mechanisms by which the concentration can be encoded internally: amplitude modulation (AM), where the absolute concentration of an internal signaling molecule encodes the stimulus, and frequency modulation (FM), where the period between successive bursts represents the stimulus. Although both mechanisms have been observed in biological systems, the question of when it is beneficial for cells to use either AM or FM is largely unanswered. Here, we first consider a simple model for a single receptor (or ion channel), which can either signal continuously whenever a ligand is bound, or produce a burst in signaling molecule upon receptor binding. We find that bursty signaling is more accurate than continuous signaling only for sufficiently fast dynamics. This suggests that modulation based on bursts may be more common in signaling networks than in gene regulation. We then extend our model to multiple receptors, where continuous and bursty signaling are equivalent to AM and FM respectively, finding that AM is always more accurate. This implies that the reason some cells use FM is related to factors other than accuracy, such as the ability to coordinate expression of multiple genes or to implement threshold crossing mechanisms.
Date Issued
2015-06-01
Date Acceptance
2015-03-03
Citation
Plos Computational Biology, 2015, 11 (6), pp.e1004222-e1004222
ISSN
1553-7358
Publisher
Public Library of Science
Start Page
e1004222
End Page
e1004222
Journal / Book Title
Plos Computational Biology
Volume
11
Issue
6
Copyright Statement
© 2015 Micali et al. This is an open
access article distributed under the terms of the
Creative Commons Attribution License, which permits
unrestricted use, distribution, and reproduction in any
medium, provided the original author and source are
credited.
access article distributed under the terms of the
Creative Commons Attribution License, which permits
unrestricted use, distribution, and reproduction in any
medium, provided the original author and source are
credited.
License URL
Identifier
PII: PCOMPBIOL-D-14-01690
Publication Status
Published