A method to estimate the size and characteristics of HIV-positive populations using an individual-based stochastic simulation model
File(s)00001648-201603000-00012.pdf (944.73 KB) fitting method 1 paper - resubmitted v2 clean.docx (47.35 KB)
Published version
Accepted version
Author(s)
Type
Journal Article
Abstract
It is important not only to collect epidemiologic data on
HIV but to also fully utilize such information to understand the epidemic
over time and to help inform and monitor the impact of policies
and interventions. We describe and apply a novel method to estimate
the size and characteristics of HIV-positive populations. The method
was applied to data on men who have sex with men living in the UK
and to a pseudo dataset to assess performance for different data availability.
The individual-based simulation model was calibrated using an approximate Bayesian computation-based approach. In 2013,
48,310 (90% plausibility range: 39,900–45,560) men who have sex
with men were estimated to be living with HIV in the UK, of whom
10,400 (6,160–17,350) were undiagnosed. There were an estimated
3,210 (1,730–5,350) infections per year on average between 2010
and 2013. Sixty-two percent of the total HIV-positive population are
thought to have viral load <500 copies/ml. In the pseudo-epidemic
example, HIV estimates have narrower plausibility ranges and are
closer to the true number, the greater the data availability to calibrate
the model. We demonstrate that our method can be applied to settings
with less data, however plausibility ranges for estimates will be wider
to reflect greater uncertainty of the data used to fit the model.
HIV but to also fully utilize such information to understand the epidemic
over time and to help inform and monitor the impact of policies
and interventions. We describe and apply a novel method to estimate
the size and characteristics of HIV-positive populations. The method
was applied to data on men who have sex with men living in the UK
and to a pseudo dataset to assess performance for different data availability.
The individual-based simulation model was calibrated using an approximate Bayesian computation-based approach. In 2013,
48,310 (90% plausibility range: 39,900–45,560) men who have sex
with men were estimated to be living with HIV in the UK, of whom
10,400 (6,160–17,350) were undiagnosed. There were an estimated
3,210 (1,730–5,350) infections per year on average between 2010
and 2013. Sixty-two percent of the total HIV-positive population are
thought to have viral load <500 copies/ml. In the pseudo-epidemic
example, HIV estimates have narrower plausibility ranges and are
closer to the true number, the greater the data availability to calibrate
the model. We demonstrate that our method can be applied to settings
with less data, however plausibility ranges for estimates will be wider
to reflect greater uncertainty of the data used to fit the model.
Date Issued
2016-03-01
Date Acceptance
2015-11-23
Citation
Epidemiology, 2016, 27 (2), pp.247-256
ISSN
1531-5487
Publisher
Lippincott, Williams & Wilkins
Start Page
247
End Page
256
Journal / Book Title
Epidemiology
Volume
27
Issue
2
Copyright Statement
Copyright © 2015 Wolters Kluwer Health, Inc. All rights reserved. This is
an open-access article distributed under the terms of the Creative Commons
Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND),
where it is permissible to download and share the work provided it is properly
cited. The work cannot be changed in any way or used commercially
an open-access article distributed under the terms of the Creative Commons
Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND),
where it is permissible to download and share the work provided it is properly
cited. The work cannot be changed in any way or used commercially
Sponsor
Wellcome Trust
Grant Number
092311/Z/10/Z
Subjects
SSOPHIE project working group in EuroCoord
Epidemiology
0104 Statistics
1117 Public Health And Health Services
Publication Status
Published