Machine learning to predict toxicity of compounds
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Submitted version
Author(s)
Grenet, Ingrid
Yin, Yonghua
Comet, Jean-Paul
Gelenbe, Erol
Type
Conference Paper
Abstract
Toxicology studies are subject to several concerns, and they raise the importance of an early detection of the potential for toxicity of chemical compounds which is currently evaluated through in vitro assays assessing their bioactivity, or using costly and ethically questionable in vivo tests on animals. Thus we investigate the prediction of the bioactivity of chemical compounds from their physico-chemical structure, and propose that it be automated using machine learning (ML) techniques based on data from in vitro assessment of several hundred chemical compounds. We provide the results of tests with this approach using several ML techniques, using both a restricted dataset and a larger one. Since the available empirical data is unbalanced, we also use data augmentation techniques to improve the classification accuracy, and present the resulting improvements.
Editor(s)
Kurkova, V
Manolopoulos, Y
Hammer, B
Iliadis, L
Maglogiannis, I
Date Issued
2018-09-27
Date Acceptance
2018-09-27
Citation
Artificial Neural Networks and Machine Learning – ICANN 2018, 2018, pp.335-345
ISBN
9783030014179
ISSN
0302-9743
Publisher
Springer
Start Page
335
End Page
345
Journal / Book Title
Artificial Neural Networks and Machine Learning – ICANN 2018
Copyright Statement
© Springer Nature Switzerland AG 2018. This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the
material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation,
broadcasting, reproduction on microfilms or in any other physical way, and transmission or information
storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now
known or hereafter developed.
material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation,
broadcasting, reproduction on microfilms or in any other physical way, and transmission or information
storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now
known or hereafter developed.
Sponsor
EU H2020 Framework Programme for Research and Innovation
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000463336400033&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Source
27th International Conference on Artificial Neural Networks (ICANN)
Subjects
Science & Technology
Technology
Computer Science, Artificial Intelligence
Computer Science
Machine learning
Toxicity
QSAR
Data augmentation
FUNCTION APPROXIMATION
Publication Status
Published
Start Date
2018-10-04
Finish Date
2018-10-07
Coverage Spatial
Rhodes, Greece
Date Publish Online
2018-09-27