Conditional iron and pH-dependent activity of a non-enzymatic glycolysis and pentose phosphate pathway
Author(s)
Type
Journal Article
Abstract
Little is known about the evolutionary origins of metabolism. However, key biochemical reactions of glycolysis and the pentose phosphate pathway (PPP), ancient metabolic pathways central to the metabolic network, have non-enzymatic pendants that occur in a prebiotically plausible reaction milieu reconstituted to contain Archean sediment metal components. These non-enzymatic reactions could have given rise to the origin of glycolysis and the PPP during early evolution. Using nuclear magnetic resonance spectroscopy and high-content metabolomics that allowed us to measure several thousand reaction mixtures, we experimentally address the chemical logic of a metabolism-like network constituted from these non-enzymatic reactions. Fe(II), the dominant transition metal component of Archean oceanic sediments, has binding affinity toward metabolic sugar phosphates and drives metabolism-like reactivity acting as both catalyst and cosubstrate. Iron and pH dependencies determine a metabolism-like network topology and comediate reaction rates over several orders of magnitude so that the network adopts conditional activity. Alkaline pH triggered the activity of the non-enzymatic PPP pendant, whereas gentle acidic or neutral conditions favored non-enzymatic glycolytic reactions. Fe(II)-sensitive glycolytic and PPP-like reactions thus form a chemical network mimicking structural features of extant carbon metabolism, including topology, pH dependency, and conditional reactivity. Chemical networks that obtain structure and catalysis on the basis of transition metals found in Archean sediments are hence plausible direct precursors of cellular metabolic networks.
Date Issued
2016-01-01
Date Acceptance
2015-11-18
Citation
Science Advances, 2016, 2 (1)
ISSN
2375-2548
Publisher
American Association for the Advancement of Science
Journal / Book Title
Science Advances
Volume
2
Issue
1
Copyright Statement
© 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). This is an open-access article distributed under the terms of the Creative Commons Attribution license, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
License URL
Identifier
https://www.ncbi.nlm.nih.gov/pubmed/26824074
PII: 1501235
Subjects
conditional chemical networks
early evolution of metabolism
iron activated metabolism-like interconversions
liquid chromatography - tandem mass spectrometry
metabolic network
metabolomics
non-enzymatic network topology
pH dependency
Biological Evolution
Carbon
Catalysis
Glycolysis
Hydrogen-Ion Concentration
Iron
Magnetic Resonance Spectroscopy
Metabolic Networks and Pathways
Metabolomics
Oceans and Seas
Pentose Phosphate Pathway
Sugar Phosphates
Publication Status
Published
Coverage Spatial
United States
Article Number
ARTN e1501235
Date Publish Online
2016-01-15