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  4. A note on utilising binary features as ligand descriptors
 
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A note on utilising binary features as ligand descriptors
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A note on utilising binary features as ligand descriptors.pdf (1022.61 KB)
Published version
Author(s)
Mussa, HY
Mitchell, JBO
Glen, RC
Type
Journal Article
Abstract
It is common in cheminformatics to represent the properties of a ligand as a string of 1’s and 0’s, with the intention of
elucidating, inter alia, the relationship between the chemical structure of a ligand and its bioactivity. In this commentary
we note that, where relevant but non-redundant features are binary, they inevitably lead to a classifier capable
of capturing only a linear relationship between structural features and activity. If, instead, we were to use relevant
but non-redundant real-valued features, the resulting predictive model would be capable of describing a non-linear
structure-activity relationship. Hence, we suggest that real-valued features, where available, are to be preferred in this
scenario.
Date Issued
2015-12-01
Date Acceptance
2015-11-11
Citation
Journal of Cheminformatics, 2015, 7
URI
http://hdl.handle.net/10044/1/28775
DOI
https://www.dx.doi.org/10.1186/s13321-015-0105-3
ISSN
1758-2946
Publisher
Chemistry Central
Journal / Book Title
Journal of Cheminformatics
Volume
7
Copyright Statement
© 2015 Mussa et al. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License
(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium,
provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license,
and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/
publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated
License URL
http://creativecommons.org/licenses/by/4.0/
Subjects
Science & Technology
Physical Sciences
Technology
Chemistry, Multidisciplinary
Computer Science, Information Systems
Computer Science, Interdisciplinary Applications
Chemistry
Computer Science
Binary descriptors
Ligand chemical structure
Linear relationship
Bernoulli distribution
MUTUAL INFORMATION
FEATURE-SELECTION
Publication Status
Published
Article Number
58
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