Adaptive spike detection and hardware optimization towards autonomous, high-channel-count BMIs
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Accepted version
Author(s)
Zhang, Zheng
Constandinou, Timothy
Type
Journal Article
Abstract
Background
The progress in microtechnology has enabled an exponential trend in the number of neurons that can be simultaneously recorded. The data bandwidth requirement is however increasing with channel count. The vast majority of experimental work involving electrophysiology stores the raw data and then processes this offline; to detect the underlying spike events. Emerging applications however require new methods for local, real-time processing.
New Methods
We have developed an adaptive, low complexity spike detection algorithm that combines three novel components for: (1) removing the local field potentials; (2) enhancing the signal-to-noise ratio; and (3) computing an adaptive threshold. The proposed algorithm has been optimised for hardware implementation (i.e. minimising computations, translating to a fixed-point implementation), and demonstrated on low-power embedded targets.
Main results
The algorithm has been validated on both synthetic datasets and real recordings yielding a detection sensitivity of up to 90%. The initial hardware implementation using an off-the-shelf embedded platform demonstrated a memory requirement of less than 0.1 kb ROM and 3 kb program flash, consuming an average power of 130 μW.
Comparison with Existing Methods
The method presented has the advantages over other approaches, that it allows spike events to be robustly detected in real-time from neural activity in a completely autonomous way, without the need for any calibration, and can be implemented with low hardware resources.
Conclusion
The proposed method can detect spikes effectively and adaptively. It alleviates the need for re-calibration, which is critical towards achieving a viable BMI, and more so with future ‘high bandwidth’ systems’ targeting 1000s of channels.
The progress in microtechnology has enabled an exponential trend in the number of neurons that can be simultaneously recorded. The data bandwidth requirement is however increasing with channel count. The vast majority of experimental work involving electrophysiology stores the raw data and then processes this offline; to detect the underlying spike events. Emerging applications however require new methods for local, real-time processing.
New Methods
We have developed an adaptive, low complexity spike detection algorithm that combines three novel components for: (1) removing the local field potentials; (2) enhancing the signal-to-noise ratio; and (3) computing an adaptive threshold. The proposed algorithm has been optimised for hardware implementation (i.e. minimising computations, translating to a fixed-point implementation), and demonstrated on low-power embedded targets.
Main results
The algorithm has been validated on both synthetic datasets and real recordings yielding a detection sensitivity of up to 90%. The initial hardware implementation using an off-the-shelf embedded platform demonstrated a memory requirement of less than 0.1 kb ROM and 3 kb program flash, consuming an average power of 130 μW.
Comparison with Existing Methods
The method presented has the advantages over other approaches, that it allows spike events to be robustly detected in real-time from neural activity in a completely autonomous way, without the need for any calibration, and can be implemented with low hardware resources.
Conclusion
The proposed method can detect spikes effectively and adaptively. It alleviates the need for re-calibration, which is critical towards achieving a viable BMI, and more so with future ‘high bandwidth’ systems’ targeting 1000s of channels.
Date Issued
2021-04-15
Date Acceptance
2021-02-15
Citation
Journal of Neuroscience Methods, 2021, 354
ISSN
0165-0270
Publisher
Elsevier
Journal / Book Title
Journal of Neuroscience Methods
Volume
354
Copyright Statement
© 2021 Elsevier B.V. All rights reserved. . This manuscript is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International Licence http://creativecommons.org/licenses/by-nc-nd/4.0/
Subjects
Adaptive threshold
Embedded system
Hardware-efficient
Low power
Multi-unit activity
Neural interface
Spike detection
Neurology & Neurosurgery
1109 Neurosciences
1701 Psychology
1702 Cognitive Sciences
Publication Status
Published
Article Number
ARTN 109103
Date Publish Online
2021-02-20