Reducing metabolic burden in the PACEmid evolver system by remastering high copy phagemid vectors
File(s)
Author(s)
Davenport, Beth
Tica, Jure
Isalan, Mark
Type
Journal Article
Abstract
Orthogonal or non-cross-reacting transcription factors are used in synthetic biology as components
of genetic circuits. Brödel et al. (2016) engineered 12 such cIλ transcription factor variants, using a
directed evolution ‘PACEmid’ system. The variants operate as dual activator/repressors and expand
gene circuit construction possibilities. However, the high-copy phagemid vectors carrying the cIλ
variants imposed high metabolic burden upon cells. Here, we ‘remaster’ the phagemid backbones to
relieve their burden substantially, exhibited by a recovery in E. coli growth. The remastered
phagemids’ ability to function within the PACEmid evolver system is maintained, as is the cIλ
transcription factors’ activity within these vectors. The low-burden phagemid versions are more
suitable for use in PACEmid experiments and synthetic gene circuits; we have therefore replaced the
original high-burden phagemids on the Addgene repository. Our work emphasises the importance of
understanding metabolic burden and incorporating it into design steps in future synthetic biology
ventures.
of genetic circuits. Brödel et al. (2016) engineered 12 such cIλ transcription factor variants, using a
directed evolution ‘PACEmid’ system. The variants operate as dual activator/repressors and expand
gene circuit construction possibilities. However, the high-copy phagemid vectors carrying the cIλ
variants imposed high metabolic burden upon cells. Here, we ‘remaster’ the phagemid backbones to
relieve their burden substantially, exhibited by a recovery in E. coli growth. The remastered
phagemids’ ability to function within the PACEmid evolver system is maintained, as is the cIλ
transcription factors’ activity within these vectors. The low-burden phagemid versions are more
suitable for use in PACEmid experiments and synthetic gene circuits; we have therefore replaced the
original high-burden phagemids on the Addgene repository. Our work emphasises the importance of
understanding metabolic burden and incorporating it into design steps in future synthetic biology
ventures.
Date Issued
2022-06-01
Date Acceptance
2022-04-20
Citation
Engineering Biology, 2022, 6 (2-3), pp.50-61
ISSN
2398-6182
Publisher
Institution of Engineering and Technology (IET)
Start Page
50
End Page
61
Journal / Book Title
Engineering Biology
Volume
6
Issue
2-3
Copyright Statement
© 2022 The Authors. Engineering Biology published by John Wiley & Sons Ltd on behalf of The Institution of Engineering and Technology.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
License URL
Publication Status
Published
Date Publish Online
2022-05-20