A novel astrovirus-like RNA virus detected in human stool
File(s)
Author(s)
Type
Journal Article
Abstract
Several novel clades of astroviruses have recently been identified in human faecal samples. Here, we describe a novel astrovirus-like RNA virus detected in human stools, which we have tentatively named bastrovirus. The genome of this novel virus consists of 6,300 nucleotides organized in three open reading frames. Several sequence divergent strains were detected sharing 67–93 per cent nucleotide identity. Bastrovirus encodes a putative structural protein that is homologous to the capsid protein found in members of the Astroviridae family (45% amino acid identity). The virus also encodes a putative non-structural protein that is genetically distant from astroviruses but shares some homology to the non-structural protein encoded by members of the Hepeviridae family (28% amino acid identity). This novel bastrovirus is present in 8.7 per cent (35/400) of faecal samples collected from 300 HIV-1-positive and 100 HIV-1-negative individuals suggesting common occurrence of the virus. However, whether the source of the virus is infected human cells or other, for example, dietary, remains to be determined.
Date Issued
2016-03-02
Date Acceptance
2016-03-01
Citation
Virus Evolution, 2016, 2 (1)
ISSN
2057-1577
Publisher
Oxford University Press (OUP)
Journal / Book Title
Virus Evolution
Volume
2
Issue
1
Copyright Statement
© 2016 The Authors. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000399949900009&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Subjects
Science & Technology
Life Sciences & Biomedicine
Virology
astrovirus
hepatitis E virus
virus discovery
next generation sequencing
novel virus
bastrovirus
HEPATITIS-E VIRUS
HUMAN-IMMUNODEFICIENCY-VIRUS
MLB-CLADE
VA-CLADE
SEQUENCE
GENOME
GASTROENTERITIS
INFECTION
CHILDREN
DIARRHEA
Publication Status
Published
Date Publish Online
2016-03-02