Model-based analysis of cell cycle responses to dynamically varying environments
File(s)journal.pcbi.1004604.PDF (942.14 KB)
Published version
Author(s)
Seaton, D
Krishnan, J
Type
Journal Article
Abstract
Cell cycle progression is carefully coordinated with a cell’s intra- and extracellular environment. While some pathways have been identified that communicate information from the environment to the cell cycle, a systematic understanding of how this information is dynamically processed is lacking. We address this by performing dynamic sensitivity analysis of three mathematical models of the cell cycle in Saccharomyces cerevisiae. We demonstrate that these models make broadly consistent qualitative predictions about cell cycle progression under dynamically changing conditions. For example, it is shown that the models predict anticorrelated changes in cell size and cell cycle duration under different environments independently of the growth rate. This prediction is validated by comparison to available literature data. Other consistent patterns emerge, such as widespread nonmonotonic changes in cell size down generations in response to parameter changes. We extend our analysis by investigating glucose signalling to the cell cycle, showing that known regulation of Cln3 translation and Cln1,2 transcription by glucose is sufficient to explain the experimentally observed changes in cell cycle dynamics at different glucose concentrations. Together, these results provide a framework for understanding the complex responses the cell cycle is capable of producing in response to dynamic environments.
Date Issued
2016-01-07
Date Acceptance
2015-10-14
Citation
PLOS Computational Biology, 2016, 12 (1)
ISSN
1553-734X
Publisher
Public Library of Science
Journal / Book Title
PLOS Computational Biology
Volume
12
Issue
1
Copyright Statement
© 2016 Seaton, Krishnan. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
License URL
Subjects
Science & Technology
Life Sciences & Biomedicine
Biochemical Research Methods
Mathematical & Computational Biology
Biochemistry & Molecular Biology
YEAST SACCHAROMYCES-CEREVISIAE
BUDDING YEAST
MITOTIC EXIT
SYSTEMATIC IDENTIFICATION
TRANSLATION INITIATION
CIRCADIAN CLOCKS
DOWN-REGULATION
DIVISION CYCLE
SIZE CONTROL
GROWTH-RATE
Cell Cycle
Glucose
Models, Biological
Saccharomyces cerevisiae
Signal Transduction
Systems Biology
Bioinformatics
06 Biological Sciences
08 Information And Computing Sciences
01 Mathematical Sciences
Publication Status
Published
Article Number
e1004604
Date Publish Online
2016-01-07