Real-time prediction of segmentation quality
File(s)robinson2018miccai.pdf (722.66 KB)
Accepted version
Author(s)
Type
Conference Paper
Abstract
Recent advances in deep learning based image segmentation
methods have enabled real-time performance with human-level accuracy.
However, occasionally even the best method fails due to low image qual-
ity, artifacts or unexpected behaviour of black box algorithms. Being
able to predict segmentation quality in the absence of ground truth is of
paramount importance in clinical practice, but also in large-scale studies
to avoid the inclusion of invalid data in subsequent analysis.
In this work, we propose two approaches of real-time automated quality
control for cardiovascular MR segmentations using deep learning. First,
we train a neural network on 12,880 samples to predict Dice Similarity
Coefficients (DSC) on a per-case basis. We report a mean average error
(MAE) of 0.03 on 1,610 test samples and 97% binary classification accu-
racy for separating low and high quality segmentations. Secondly, in the
scenario where no manually annotated data is available, we train a net-
work to predict DSC scores from estimated quality obtained via a reverse
testing strategy. We report an MAE = 0.14 and 91% binary classifica-
tion accuracy for this case. Predictions are obtained in real-time which,
when combined with real-time segmentation methods, enables instant
feedback on whether an acquired scan is analysable while the patient is
still in the scanner. This further enables new applications of optimising
image acquisition towards best possible analysis results.
methods have enabled real-time performance with human-level accuracy.
However, occasionally even the best method fails due to low image qual-
ity, artifacts or unexpected behaviour of black box algorithms. Being
able to predict segmentation quality in the absence of ground truth is of
paramount importance in clinical practice, but also in large-scale studies
to avoid the inclusion of invalid data in subsequent analysis.
In this work, we propose two approaches of real-time automated quality
control for cardiovascular MR segmentations using deep learning. First,
we train a neural network on 12,880 samples to predict Dice Similarity
Coefficients (DSC) on a per-case basis. We report a mean average error
(MAE) of 0.03 on 1,610 test samples and 97% binary classification accu-
racy for separating low and high quality segmentations. Secondly, in the
scenario where no manually annotated data is available, we train a net-
work to predict DSC scores from estimated quality obtained via a reverse
testing strategy. We report an MAE = 0.14 and 91% binary classifica-
tion accuracy for this case. Predictions are obtained in real-time which,
when combined with real-time segmentation methods, enables instant
feedback on whether an acquired scan is analysable while the patient is
still in the scanner. This further enables new applications of optimising
image acquisition towards best possible analysis results.
Date Issued
2018-09-13
Date Acceptance
2018-05-25
Citation
Lecture Notes in Computer Science, 2018, pp.578-585
ISSN
0302-9743
Publisher
Springer Verlag
Start Page
578
End Page
585
Journal / Book Title
Lecture Notes in Computer Science
Copyright Statement
© Springer Nature Switzerland AG 2018. The final publication is available at Springer via https://doi.org/10.1007/978-3-030-00937-3_66
Sponsor
GlaxoSmithKline
Commission of the European Communities
Engineering & Physical Science Research Council (EPSRC)
Identifier
https://link.springer.com/chapter/10.1007%2F978-3-030-00937-3_66
Grant Number
H2020 - 757173
EP/P001009/1
Source
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)
Subjects
Science & Technology
Technology
Computer Science, Theory & Methods
Imaging Science & Photographic Technology
Computer Science
cs.CV
cs.CV
Artificial Intelligence & Image Processing
Publication Status
Published
Start Date
2018-09-16
Finish Date
2018-09-20
Coverage Spatial
Granada, Spain
Date Publish Online
2018-09-13