mRNA display reveals a class of high-affinity bromodomain-binding motifs that are not found in the human proteome
Author(s)
Type
Journal Article
Abstract
Bromodomains (BDs) regulate gene expression by recognizing protein motifs containing acetyllysine. Although originally characterized as histone-binding proteins, it has since become clear that these domains interact with other acetylated proteins, perhaps most prominently transcription factors. The likely transient nature and low stoichiometry of such modifications, however, has made it challenging to fully define the interactome of any given BD. To begin to address this knowledge gap in an unbiased manner, we carried out mRNA display screens against a BD—the N-terminal BD of BRD3—using peptide libraries that contained either one or two acetyllysine residues. We discovered peptides with very strong consensus sequences and with affinities that are significantly higher than typical BD–peptide interactions. X-ray crystal structures also revealed modes of binding that have not been seen with natural ligands. Intriguingly, however, our sequences are not found in the human proteome, perhaps suggesting that strong binders to BDs might have been selected against during evolution.
Date Issued
2023-12
Date Acceptance
2023-11-01
Citation
Journal of Biological Chemistry, 2023, 299 (12)
ISSN
0021-9258
Publisher
Elsevier
Journal / Book Title
Journal of Biological Chemistry
Volume
299
Issue
12
Copyright Statement
© 2023 THE AUTHORS. Published by Elsevier Inc on behalf of American Society for Biochemistry and Molecular Biology. This is an open access article under the CC
BY license (http://creativecommons.org/licenses/by/4.0/).
BY license (http://creativecommons.org/licenses/by/4.0/).
License URL
Identifier
https://www.sciencedirect.com/science/article/pii/S0021925823025103
Subjects
Biochemistry & Molecular Biology
BRD4
Life Sciences & Biomedicine
PEPTIDES
RECOGNITION
Science & Technology
SH3 DOMAIN
STRUCTURAL BASIS
TAIL
Publication Status
Published
Article Number
105482
Date Publish Online
2023-11-20