Molecular modeling of a tandem two pore domain potassium channel reveals a putative binding Site for general anesthetics
Author(s)
Bertaccini, EJ
Dickinson, R
Trudell, JR
Franks, NP
Type
Journal Article
Abstract
Anesthetics are thought to mediate a portion of their activity via binding to and modulation of potassium channels. In particular, tandem pore potassium channels (K2P) are transmembrane ion channels whose current is modulated by the presence of general anesthetics and whose genetic absence has been shown to confer a level of anesthetic resistance. While the exact molecular structure of all K2P forms remains unknown, significant progress has been made toward understanding their structure and interactions with anesthetics via the methods of molecular modeling, coupled with the recently released higher resolution structures of homologous potassium channels to act as templates. Such models reveal the convergence of amino acid regions that are known to modulate anesthetic activity onto a common three- dimensional cavity that forms a putative anesthetic binding site. The model successfully predicts additional important residues that are also involved in the putative binding site as validated by the results of suggested experimental mutations. Such a model can now be used to further predict other amino acid residues that may be intimately involved in the target-based structure–activity relationships that are necessary for anesthetic binding.
Date Issued
2014-10-23
Date Acceptance
2014-08-02
Citation
ACS Chemical Neuroscience, 2014, 5 (12), pp.1246-1252
ISSN
1948-7193
Publisher
American Chemical Society
Start Page
1246
End Page
1252
Journal / Book Title
ACS Chemical Neuroscience
Volume
5
Issue
12
Copyright Statement
© 2014 American Chemical Society. This is an open access article published under an ACS AuthorChoice License, which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
Sponsor
Medical Research Council (MRC)
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000346682000014&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Grant Number
G0901892
Subjects
Science & Technology
Life Sciences & Biomedicine
Biochemistry & Molecular Biology
Chemistry, Medicinal
Neurosciences
Pharmacology & Pharmacy
Neurosciences & Neurology
Tandem pore potassium channel
anesthesia
homology modeling
CRYSTAL-STRUCTURE
K+ CHANNELS
SLEEP
NEUROPROTECTION
ACTIVATE
TARGETS
XENON
TRAAK
Amino Acid Sequence
Anesthetics, General
Animals
Binding Sites
Computational Biology
HEK293 Cells
Halothane
Humans
Lymnaea
Models, Molecular
Mutation
Potassium Channels, Tandem Pore Domain
Structure-Activity Relationship
Transfection
Publication Status
Published