Accelerated cell imaging and classification on FPGAs for quantitive-phase asymmetric-detection time-stretch optical microscopy
File(s)C18.pdf (1.85 MB)
Accepted version
Author(s)
Xie, J
Niu, X
Lau, AKS
Tsia, KK
So, HKH
Type
Conference Paper
Abstract
With the fundamental trade-off between speed and sensitivity, existing quantitative phase imaging (QPI) systems for diagnostics and cell classification are often limited to batch processing only small amount of offline data. While quantitative asymmetric-detection time-stretch optical microscopy (Q-ATOM) offers a unique optical platform for ultrafast and high-sensitivity quantitative phase cellular imaging, performing the computationally demanding backend QPI phase retrieval and image classification in real-time remains a major technical challenge. In this paper, we propose an optimized architecture for QPI on FPGA and compare its performance against CPU and GPU implementations in terms of speed and power efficiency. Results show that our implementation on single FPGA card demonstrates a speedup of 9.4 times over an optimized C implementation running on a 6-core CPU, and 3.47 times over the GPU implementation. It is also 24.19 and 4.88 times more power-efficient than the CPU and GPU implementation respectively. Throughput increase linearly when four FPGA cards are used to further improve the performance. We also demonstrate an increased classification accuracy when phase images instead of single-angle ATOM images are used. Overall, one FPGA card is able to process and categorize 2497 cellular images per second, making it suitable for real-time single-cell analysis applications.
Date Issued
2015-12-09
Date Acceptance
2015-10-12
Citation
2015, pp.1-8
Publisher
IEEE
Start Page
1
End Page
8
Copyright Statement
© 2015 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.
Sponsor
Engineering & Physical Science Research Council (E
Grant Number
PO 1553380
Source
2015 International Conference on Field-Programmable Technology
Publication Status
Published
Start Date
2015-12-07
Finish Date
2015-12-09
Coverage Spatial
Queenstown, New Zealand