Synergy and antagonism in regulation of recombinant human INO80 chromatin remodeling complex
File(s)Nucl. Acids Res.-2016-Willhoft-nar-gkw509.pdf (2.4 MB) Submitted.pdf (8.08 MB)
Published version
Accepted version
Author(s)
Willhoft, O
Bythell-Douglas, R
Mccormack, EA
Wigley, DB
Type
Journal Article
Abstract
We have purified a minimal core human Ino80 complex from recombinant protein expressed
in insect cells. The complex comprises one subunit each of an N-terminally truncated Ino80,
actin, Arp4, Arp5, Arp8, Ies2 and Ies6, together with a single heterohexamer of the Tip49a
and Tip49b proteins. This core complex has nucleosome sliding activity that is similar to that
of endogenous human and yeast Ino80 complexes and is also inhibited by inositol
hexaphosphate (IP6). We show that IP6 is a non-competitive inhibitor that acts by blocking
the stimulatory effect of nucleosomes on the ATPase activity. The IP6 binding site is located
within the C-terminal region of the Ino80 subunit. We have also prepared complexes lacking
combinations of Ies2 and Arp5/Ies6 subunits that reveal regulation imposed by each of them
individually and synergistically that couples ATP hydrolysis to nucleosome sliding. This
coupling between Ies2 and Arp5/Ies6 can be overcome in a bypass mutation of the Arp5
subunit that is active in the absence of Ies2. These studies reveal several underlying
mechanisms for regulation of ATPase activity involving a complex interplay between these
protein subunits and IP6 that in turn controls nucleosome sliding.
in insect cells. The complex comprises one subunit each of an N-terminally truncated Ino80,
actin, Arp4, Arp5, Arp8, Ies2 and Ies6, together with a single heterohexamer of the Tip49a
and Tip49b proteins. This core complex has nucleosome sliding activity that is similar to that
of endogenous human and yeast Ino80 complexes and is also inhibited by inositol
hexaphosphate (IP6). We show that IP6 is a non-competitive inhibitor that acts by blocking
the stimulatory effect of nucleosomes on the ATPase activity. The IP6 binding site is located
within the C-terminal region of the Ino80 subunit. We have also prepared complexes lacking
combinations of Ies2 and Arp5/Ies6 subunits that reveal regulation imposed by each of them
individually and synergistically that couples ATP hydrolysis to nucleosome sliding. This
coupling between Ies2 and Arp5/Ies6 can be overcome in a bypass mutation of the Arp5
subunit that is active in the absence of Ies2. These studies reveal several underlying
mechanisms for regulation of ATPase activity involving a complex interplay between these
protein subunits and IP6 that in turn controls nucleosome sliding.
Date Issued
2016-10-30
Date Acceptance
2016-05-23
Citation
Nucleic Acids Research, 2016, 44 (17), pp.8179-8188
ISSN
1362-4962
Publisher
Oxford University Press
Start Page
8179
End Page
8188
Journal / Book Title
Nucleic Acids Research
Volume
44
Issue
17
Copyright Statement
© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
License URL
Sponsor
Wellcome Trust
Cancer Research UK
Medical Research Council (MRC)
Identifier
https://academic.oup.com/nar/article/44/17/8179/2468024
Grant Number
095519/B/11/Z
12799
MR/N009258/1
Subjects
Science & Technology
Life Sciences & Biomedicine
Biochemistry & Molecular Biology
HISTONE OCTAMER
INOSITOL POLYPHOSPHATES
NUCLEOSOME
ACTIN
BINDING
ARCHITECTURE
MECHANISM
LENGTH
STATES
CORE
ATPases Associated with Diverse Cellular Activities
Adenosine Triphosphatases
Animals
Cell Line
Chromatin Assembly and Disassembly
DNA Helicases
DNA-Binding Proteins
Electrophoresis, Polyacrylamide Gel
Fluorescence Resonance Energy Transfer
Humans
Hydrolysis
Multiprotein Complexes
Mutation
Nucleosomes
Phytic Acid
Protein Subunits
Recombinant Proteins
Cell Line
Nucleosomes
Animals
Humans
Phytic Acid
Multiprotein Complexes
DNA Helicases
DNA-Binding Proteins
Protein Subunits
Recombinant Proteins
Electrophoresis, Polyacrylamide Gel
Fluorescence Resonance Energy Transfer
Chromatin Assembly and Disassembly
Hydrolysis
Mutation
Adenosine Triphosphatases
ATPases Associated with Diverse Cellular Activities
05 Environmental Sciences
06 Biological Sciences
08 Information and Computing Sciences
Developmental Biology
Publication Status
Published
Date Publish Online
2016-06-02