Ensemble machine learning methods in screening electronic health records: a scoping review
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Published version
Author(s)
Type
Journal Article
Abstract
Background:
Electronic Health Records (EHRs) provide the opportunity to identify undiagnosed individuals likely to have a given disease using Machine Learning (ML) techniques, and who could then benefit from more medical screening and case finding, reducing the number needed to screen with convenience and healthcare cost savings. Ensemble Machine Learning Models (EMLs) combining multiple prediction estimates into one, are often said to provide better predictive performances than non-ensemble models. Yet, to our knowledge, no literature review summarises the use and performances of different types of EMLs in the context of medical pre-screening.
Method:
We aimed to conduct a scoping review of the literature reporting the derivation of EMLs for screening of EHRs. We searched EMBASE and MEDLINE databases across all years applying a formal search strategy using terms related to medical screening, EHR and ML. Data were collected, analysed, and reported in accordance with the PRISMA scoping review guideline.
Results:
A total of 3,355 articles were retrieved, of which 145 articles met our inclusion criteria and were included in this study. EMLs were increasingly employed across several medical specialities and often outperformed non-ensemble approaches. EMLs with complex combination strategies and heterogeneous classifiers often outperformed other types of EMLs but were also less used. EML methodologies, processing steps and data sources were often not clearly described.
Conclusions:
Our work highlights the importance of deriving and comparing the performances of different types of EMLs when screening EHRs and underscores the need for more comprehensive reporting of ML methodologies employed in clinical research.
Electronic Health Records (EHRs) provide the opportunity to identify undiagnosed individuals likely to have a given disease using Machine Learning (ML) techniques, and who could then benefit from more medical screening and case finding, reducing the number needed to screen with convenience and healthcare cost savings. Ensemble Machine Learning Models (EMLs) combining multiple prediction estimates into one, are often said to provide better predictive performances than non-ensemble models. Yet, to our knowledge, no literature review summarises the use and performances of different types of EMLs in the context of medical pre-screening.
Method:
We aimed to conduct a scoping review of the literature reporting the derivation of EMLs for screening of EHRs. We searched EMBASE and MEDLINE databases across all years applying a formal search strategy using terms related to medical screening, EHR and ML. Data were collected, analysed, and reported in accordance with the PRISMA scoping review guideline.
Results:
A total of 3,355 articles were retrieved, of which 145 articles met our inclusion criteria and were included in this study. EMLs were increasingly employed across several medical specialities and often outperformed non-ensemble approaches. EMLs with complex combination strategies and heterogeneous classifiers often outperformed other types of EMLs but were also less used. EML methodologies, processing steps and data sources were often not clearly described.
Conclusions:
Our work highlights the importance of deriving and comparing the performances of different types of EMLs when screening EHRs and underscores the need for more comprehensive reporting of ML methodologies employed in clinical research.
Date Issued
2023-05
Date Acceptance
2023-04-14
Citation
Digital Health, 2023, 9, pp.1-17
ISSN
2055-2076
Publisher
SAGE Publishing
Start Page
1
End Page
17
Journal / Book Title
Digital Health
Volume
9
Copyright Statement
© The Author(s) 2023.
Creative Commons CC BY: This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.
org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is
attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage)
Creative Commons CC BY: This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.
org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is
attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage)
License URL
Identifier
https://journals.sagepub.com/doi/full/10.1177/20552076231173225
Publication Status
Published
Date Publish Online
2023-05-09