Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins
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Accepted version
Published version
Author(s)
De Simone, A
Sanz-Hernandez, M
Vostrikov, V
Veglia, G
Type
Journal Article
Abstract
The structural dynamics governing collective motions in oligomeric membrane proteins play key
roles in vital biomolecular processes at cellular membranes. In this study, we present a
structural refinement approach that combines solid-state NMR experiments and molecular
simulations to accurately describe concerted conformational transitions identifying the overall
structural, dynamical, and topological states of oligomeric membrane proteins. The accuracy of
the structural ensembles generated with this method is shown to reach the statistical error
limit, and is further demonstrated by correctly reproducing orthogonal NMR data. We
demonstrate the accuracy of this approach by characterising the pentameric state of
phospholamban, a key player in the regulation of calcium uptake in the sarcoplasmic reticulum,
and by probing its dynamical activation upon phosphorylation. Our results underline the
importance of using an ensemble approach to characterise the conformational transitions that
are often responsible for the biological function of oligomeric membrane protein states.
roles in vital biomolecular processes at cellular membranes. In this study, we present a
structural refinement approach that combines solid-state NMR experiments and molecular
simulations to accurately describe concerted conformational transitions identifying the overall
structural, dynamical, and topological states of oligomeric membrane proteins. The accuracy of
the structural ensembles generated with this method is shown to reach the statistical error
limit, and is further demonstrated by correctly reproducing orthogonal NMR data. We
demonstrate the accuracy of this approach by characterising the pentameric state of
phospholamban, a key player in the regulation of calcium uptake in the sarcoplasmic reticulum,
and by probing its dynamical activation upon phosphorylation. Our results underline the
importance of using an ensemble approach to characterise the conformational transitions that
are often responsible for the biological function of oligomeric membrane protein states.
Date Issued
2016-03-15
Date Acceptance
2016-02-25
Citation
Scientific Reports, 2016, 6
ISSN
2045-2322
Publisher
Nature Publishing Group
Journal / Book Title
Scientific Reports
Volume
6
Copyright Statement
This work is licensed under a Creative Commons Attribution 4.0 International License. The images
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unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license,
users will need to obtain permission from the license holder to reproduce the material. To view a copy of this
license, visit http://creativecommons.org/licenses/by/4.0/
or other third party material in this article are included in the article’s Creative Commons license,
unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license,
users will need to obtain permission from the license holder to reproduce the material. To view a copy of this
license, visit http://creativecommons.org/licenses/by/4.0/
License URL
Sponsor
British Heart Foundation
Grant Number
PG/14/93/31237
Publication Status
Published
Article Number
23063